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PRODUCT

eSpOT-ON Recombinant Protein

High-fidelity Cas9 protein for precise gene editing.

eSpOT-ON nuclease is an engineered high-fidelity Cas9 protein designed for therapeutic applications. It offers high on-target editing efficiency while minimizing off-target activity, making it a safer choice for precise cell and gene therapy development. This Cas9 protein is optimized for both accuracy and safety, providing a reliable solution for your gene editing needs.

  • Engineered for high on-target efficiency and reduced off-target effects.
  • Minimizes off-target edits, enhancing safety in therapeutic applications.
  • Produces staggered DNA cuts, which can improve DNA integration.
  • Validated for safety and specificity in cell and gene therapies

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eSpOT-ON Recombinant Protein (100 µg)

#R20ESPOTON-Sm
Description

Engineered High-Fidelity Cas9 Protein for Precision CRISPR Therapeutics

eSpOT-ON is an engineered high-fidelity Cas9 nuclease derived from Parasutterella secunda Cas9 (PsCas9) and also known as engineered PsCas9 (ePsCas9). This engineered high fidelity Cas9 nuclease belongs to the Type IIb CRISPR-Cas system and provides the specificity and activity needed to drive your therapeutic success.

It delivers precise, high on-target activity with minimal off-target effects, generates staggered DNA cuts that support efficient DNA integration, and is validated across multiple human cell types. With strong compatibility for LNP delivery and access through a simplified commercial sublicense, eSpOT-ON provides a clinically aligned Cas9 protein solution for advancing cell and gene therapies.

Image
RNP complex schematic of eSpOT-ON. Depicted in the schematic is genomic DNA (light blue), PAM sequence (pink), and predicted cut site location on genomic DNA (gray scissors). The guide RNA (gRNA) is composed of the target sequence (green) and scaffold (dark blue).

Key Features

High-Fidelity Editing:
Maximizes on-target activity while minimizing off-target modifications.

Staggered DNA Breaks:
Supports efficient and precise DNA integration for knock-ins or gene corrections.

Validated Across Cell Types:
Demonstrated performance in HEK293T, HeLa, Huh7, DLD-1, and iPSCs.

Optimized sgRNA Compatibility:
Chemically modified sgRNA enhances stability and genome targeting.

Simplified Licensing:
Streamlined commercial sublicense accelerates therapeutic development.

Deliverables

Product Number R20ESPOTON
Concentration 10 mg/ml
Delivery Format 1.5 ml plastic tube
5 x 1.5ml plastic tubes
Intended Use This product is intended for research use only
Shipping Cold Pack
Buffer Composition 20 mM HEPES, 300 mM NaCl, 50% Glycerol, 1 mM DTT, 1 mM EDTA, pH 7.5
Source E. coli
Purity ≥ 95.0%

Specifications

Specification eSpOT-ON
Size 1409 amino acids
PAM Sequence (N = any nucleotide) 5'-NGG-3’
DNA Cleavage Staggered-cut. Cleavage on the target strand occurs 3 nt upstream of the PAM, while the non-target strand is cut 6-7 nt upstream of the PAM.
Endonuclease Domains HNH and RuvC
gRNA Length 109nt
Target Sequence Length 22 nt
Enzyme Class Type IIb CRISPR-Cas system of Parasutterella secunda Cas9
guide rna

Designing your eSpOT-ON gRNA

With a 109 nucleotides (nt) guide sequence and 22nt target sequence, eSpOT-ON performs staggered DNA cuts, cleaving the target strand 3nt upstream of the PAM and the non-target strand 6-7nt upstream.

To design eSpOT-ON guide RNAs, you can use one of these guide design platforms. If the design tool doesn’t include eSpOT-ON by default, you can manually input the 5’-NGG-3’ PAM along with its staggered cut pattern to generate your eSpOT-ON guide RNAs targeting your region of interest. After selecting your eSpOT-ON gRNA target sequence, simply copy and paste it into our order platform and our team will take care of adding the eSpOT-ON scaffold (constant region) during synthesis.

To help you seamlessly integrate this high fidelity engineered Cas9 protein into your CRISPR workflows, we also offer the eSpOT-ON Controls Kit, Human. This eSpOT-ON Controls Kit includes two validated human positive control gRNAs and one non-targeting gRNA control, giving you a reliable and efficient way to test our high fidelity Cas9 protein in your experiments.

The following modifications are included on our eSpOT-ON modified gRNA:

2'-O-Methyl analog at the first 3 and last 3 bases and 3' phosphorothioate bonds between 3 first and last 4 bases

Data

High-Fidelity Cas9 Protein for Reliable Gene Editing

Low-performing Cas9 nucleases can limit editing efficiency across gene targets, making reproducibility difficult—especially in applications where precision is critical. eSpOT-ON is an engineered high-fidelity Cas9 protein designed to deliver consistent, efficient on-target editing across a broad range of targets. In many use cases, eSpOT-ON matches or exceeds the performance of other Cas9 variants, supporting dependable editing outcomes for demanding research and therapeutic workflows.

Comparable Performance with a High-Fidelity Cas9 Nuclease

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Editing activity of SpCas9, PsCas9 and eSpOT-ON across various genomic targets. Editing for each Cas9 nuclease was evaluated in HEK293T cells. Distribution of editing at 18 sites for n=3 biological repeats is represented as combined box-violin plots. The central line shows the median, with the box edges indicating the first (Q1) and third (Q3) quartiles. Whiskers extend to 1.5 times the interquartile range (IQR) from Q1 and Q3, and individual points represent outliers. A two-way ANOVA with Tukey post hoc test was used to evaluate statistical significance.

eSpOT-ON Produces Fewer Off-Targets

Some high-fidelity Cas9 proteins still exhibit reduced target specificity, leading to unintended binding and cleavage at off-target genomic sites. These off-target edits can introduce toxic effects, compromise cell viability, and create safety concerns that delay therapeutic development.

eSpOT-ON is an engineered high-fidelity Cas9 protein designed to improve target specificity and minimize off-target activity. Compared to other HiFi Cas9 proteins, eSpOT-ON delivers more controlled and predictable editing, supporting safer genome editing workflows for cell and gene therapy applications.

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Off-target properties of our high fidelity Cas9 protein analysed with CHANGE-seq. ​Fraction of on-target reads: 1.00 0.10 0.01 Fraction of on-target reads: 1.00 0.10 0.01 (a-b) Relative frequency of off-targets discovered with CHANGE-seq at two tested sites. Heatmaps show the frequency of off-target reads relative to the on-target reads for each replicate. The top 50 off-target sites identified in all three technical replicates for each Cas9 protein were visualized. Grey tiles indicate CHANGE-seq hit was not identified. ​Comparison conducted between eSpOT-ON, HiFi Cas9 protein from another vendor, PsCas9, and wild-type SpCas9.
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Quantitative assessment of off-targets consistently discovered across technical replicates of CHANGE-seq at HEKs4 and TRAC loci. Between eSpOT-ON, HiFi Cas9 protein from another vendor, PsCas9, and wild-type SpCas9 protein.

Increased Safety by Reducing Translocation Frequency

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Translocation frequency of SpCas9, PsCas9, another vendor's engineered HiFi Cas9 protein, and eSpOT-ON protein evaluated at two independent events in HEK293T cells.​
FAQ

Answers to Commonly Asked eSpOT-ON Protein Questions

If you have additional questions please connect with a member of our team.

What advantages does eSpOT-ON offer over standard Cas9 nuclease?
eSpOT‑ON is an engineered high‑fidelity Cas9 protein (derived from PsCas9) that delivers high on‑target editing efficiency while substantially reducing off‑target activity and chromosomal translocations. This makes it a safer option for therapeutic or translational gene editing applications.

Because it produces staggered DNA cuts rather than blunt ends, eSpOT‑ON can also improve the efficiency and precision of DNA integration, which is beneficial for knock‑in, gene correction, or other insertion‑based edits.

What is the difference between eSpOT-ON Protein and eSpOT-ON mRNA?
eSpOT-ON protein is delivered complexed with its gRNA as a ribonucleoprotein (RNP). Once introduced into the cell, the RNP complex is immediately active and ready to find and cut DNA. RNP delivery allows precise control over editing conditions (e.g., nuclease-to-sgRNA), enabling fine-tuning of editing conditions for highly controlled genome editing workflows.

eSpOT-ON mRNA delivers the genetic blueprint for the nuclease, which is translated by the cell after delivery. This format is well-suited for in vivo delivery approaches.

Both formats provide high-fidelity Cas9 editing; the optimal choice depends on your delivery method, desired editing kinetics, and experimental or therapeutic development needs.

How does eSpOT-ON protein’s staggered-cut mechanism support safer, more efficient DNA integration?
eSpOT‑ON protein is an engineered high-fidelity Cas9 that generates staggered DNA cuts, improving DNA repair accuracy and reducing unwanted edits. Its transient expression window further lowers the risk of off-target activity, making it a safer choice for therapeutic and preclinical applications.

Can I use the same gRNA target sequence with both SpCas9 and eSpOT-ON?
While eSpOT-ON is compatible with many gRNAs originally designed for SpCas9, performance may differ because eSpOT-ON is an engineered high-fidelity Cas9 variant with distinct structural and activity properties. Some guides targeting the same PAM-adjacent sequence may work equally well, while others may require re-optimization or testing to achieve optimal on-target efficiency and minimal off-target activity.

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